Anders Pitman

When varying -p X I am getting different answers for anything less than 4. Tried on 2 different machines. Could this be a bug in bowtie or am I just...

@BobLiterman @rachelss the latest commits here have an updated README. Should have everything necessary to get someone up and running from scratch. I'm sure it will need to be fleshed...

Here's a direct link to what it would look like: https://github.com/rachelss/SISRS/tree/93f8b0b603dbbc89e2957f7a749d3b387b8ef2d8

Also FYI sisrs is now pip-installable: `pip install sisrs` Installs sisrs-python on the user's system.

Yeah I think we should wait until we're sure everyone is happy with the new README. Preferably after we've had a user test out the instructions from scratch.

@rachelss this should be good to merge as long as @BobLiterman signs off on it!

Worked for me, thanks @aroundthfur

Yeah I can definitely put up a README. We should probably have a discussion about the user interface first to make sure it's what we want, since that's probably the...

To address some of your other concerns, based on what we've decided, I think `bin/` and `libexec/` are going to go away entirely. I've been porting over the scripts in...

I'm actually in the middle of moving everything I've done so far over to Python 3. Once that's complete I'll remove `bin/` and `libexec/` to clean things up a bit....