Anders Pitman

Let me know if you'd prefer a different approach. The requirement for certs make it a bit difficult to create a self-contained example. It would be nice if std had...

@BobLiterman on cursory inspection, I don't see any reason why we couldn't do this. Where exactly is the mapping code you're referring to in SISRS? You're not talking about `mapContigs`,...

Came across [scoop](https://github.com/soravux/scoop) today. Might be a good alternative. Posting here to remember to check it out later.

@BobLiterman do you have (or would possibly be able to create) any small datasets that would be appropriate for unit testing (< 5 seconds to run) and/or integration testing (<...

Unfortunately my input may not be very useful here. I know how assembly and alignment work, but barely understand what makes SISRS unique. That said, using bacterial data seems like...

@BobLiterman, I'm pretty sure I understand, and I really like this idea! From a testing point of view, there are several advantages. For one, when making changes to a specific...

@BobLiterman one other thing we need to keep in mind is that we're going to want to have the example data use as many features as possible, in order to...

This looks great @BobLiterman! I'll start playing with it and let you know if I have any feedback. Sounds like reference and loci aren't used as much so ignoring them...

Hey @BobLiterman, a couple questions. Is it necessary to run against all 8 species, or can we get meaningful results from just one or two? I see in the SISRS...

Sweet. I don't think it's necessary to do just yet. I should be able to do all the plumbing with what we have now. But we'll leave that as an...