TCGAmutations

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Broad/MC3 PTEN mutational frequency discrepancy

1

Hi, I am getting really different mutational frequencies in some genes, when looking at data from the Broad Firehose, compared to the MC3 source. I would expect some differences due...

alexjamesing

CCLE maf files

1

Hi PoisonAlien, I am very very new to bioinformatics and I apologize if this is a dumb questions. Would it be possible to show how you can apply your tools...

shwetha141

Request for additional metadata: Capture Kit

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Hi, Just wondering about feasibility of adding additional sample metadata, for example which capture kit was used? Reason we care about capture kit: Capture kit biases have led to false...

selkamand

Hi! After loading the study How could I use them in maftool by reading maf? > tcga_load("luad") Loading LUAD. Please cite: https://doi.org/10.1016/j.cels.2018.03.002 for reference An object of class MAF ID...

xiaodingliu

LUSC Firehose dataset includes two samples with only 1 mutation each (both silent) This makes these samples suspicious enough that they may warrant being filtered out from the RDS. They're...

selkamand