Pingjun Chen

icon indicating a website link www.cpathology.com icon indicating an email [email protected]

icon company MD Anderson Cancer Center icon location Houston, Texas icon location Computational Pathology Researcher

Results 3 issues of Pingjun Chen

Environment to Build PETDICOMExtension

I would like to build the Slicer-PETDICOMExtension on my own computer as a command-line tool to use. PETDICOMExtension seems to need to pre-install some libraries, such as Slicer, DCMTK, ITK,...

plot_results() function in "cell_segmentation/inference /inference_cellvit_experiment_pannuke.py"

**Describe the bug** Current plot_results() can't handle the attributes of predictions/ground_truth and the shape well. Updated version from my side below: def plot_results( self, imgs: Union[torch.Tensor, np.ndarray], predictions: dict, ground_truth:...

edge_information["edge_patches"] can be None in cell_detection.py

1 comment

**Describe the bug** Inside the function **_clean_edge_cells** of class **CellPostProcessor** inside [cell_detection.py](https://github.com/TIO-IKIM/CellViT/blob/main/cell_segmentation/inference/cell_detection.py), it directly indexes the first element of edge_information["edge_patches"] via "edge_information["edge_patches"][0]", which can lead to an error, since the...