MouseLand
MouseLand
Kilosort
Fast spike sorting with drift correction for up to a thousand channels
suite2p
cell detection in calcium imaging recordings
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
rastermap
a visualization method for neural data
stringer-pachitariu-et-al-2018b
Responses of 10,000 neurons to 2,800 natural images
cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
stringer-pachitariu-et-al-2018a
Recordings of 10k neurons during spontaneous behaviors