ascend

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I am using ascend according to the published paper (https://academic.oup.com/gigascience/article/8/8/giz087/5554286#140534041), and find that the command to create the EMSet is fine, but then I type "EMSet" to check what this...

atomnh

Hello again! Sorry for the frequent questions. I have everything working for data coming from cell ranger but would also like to use some of the tools in ascend with...

daacarri

Installation problem

1

Installing package into ‘/home/maod/R/x86_64-pc-linux-gnu-library/3.5’ (as ‘lib’ is unspecified) * installing *source* package ‘ascend’ ... ** R ** data *** moving datasets to lazyload DB /opt/software/helix/R/3.5.1/lib64/R/bin/INSTALL: line 34: 20273 Done echo...

DeltaMethod721

runCORE removes some cells

2

Hi, I am running ascend with the following commands: em

mkrzak

error when running runDESeq if both condition.a and condition.b contain more than 1 groups

1

Hi, after running `runCORE`, I got 4 clusters for the sample. Then I used `runDESeq` to identify DE genes between cluter1,3 and cluster2,4 with the following command. ``` cluster1_3_vs_2_4 1)...

lixin4306ren

runTSNE step couldn't finish

3

the command I used: scran_normalised

lixin4306ren

Problem with "newEMSet"

9

After the most recent update to the package, I'm able to create an EMSet, but it does not calculate the parameters that it would calculate before the update. For example,...

cmt6