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Published 20 hours ago • verified publisher icon zmahnoor14

Ideas for Pathway Annotation

Open zmahnoor14 opened this issue 2 years ago • 3 comments

Create Chemical Similarity Networks (SL + Annotations)

zmahnoor14 avatar May 20 '22 07:05 zmahnoor14

Hi, can I help? Would a mapping file linking InChIKey to WikiPathways ID help? cc @DeniseSl22

egonw avatar Mar 11 '23 11:03 egonw

Hi Egon,

Yes, I am planning to add the pathway annotation as a module for MAW, which can link SMILES (or as you suggested InChiKey) to biological pathways.

on a related note: I am currently working with two marine microalgae that are not extensively studied for their metabolic potential hence there is few information on them in compound/reaction or pathway databases and we aim to extract secondary metabolites/ secondary metabolic pathways from these microorganisms.

zmahnoor14 avatar Mar 11 '23 11:03 zmahnoor14

on a related note: I am currently working with two marine microalgae that are not extensively studied for their metabolic potential hence there is few information on them in compound/reaction or pathway databases and we aim to extract secondary metabolites/ secondary metabolic pathways from these microorganisms.

Oh, cool! Just ping me if you want to host them on WikiPathways. I'll set up the species. Are there a Ensembl gene database for the two microalgae?

egonw avatar Mar 11 '23 12:03 egonw