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problems with plot_cpdb using cellphonedb v5 outputs

Open Zifeng-L opened this issue 10 months ago • 1 comments

Hello, here are some updates with cellphoneDB v5 outputs. The "means" and "pvals" file have been changed. e34c8dfb3baaaf5b4f9621946c92bb4 Because the column 'interacting_pair' is missing in the dataset, many functions in util.R cannot find this parameter. 1714189904489 1714189931778

Zifeng-L avatar Apr 27 '24 03:04 Zifeng-L

Hi, you are using the wrong input for this. your means looks like it's deconvoluted.

zktuong avatar Apr 28 '24 06:04 zktuong