Visualization of single transcripts with a-site/p-site coverage

[AlexFryd]

Hello!

First of all thank you for developing Ribo-TISH! I have found it really useful for the QC it provides and also for uORF prediction.

I have a question that I am not sure that it is relevant to Ribo-TISH itself.

In the published paper there are several snapshots of single transcripts (e.g. Fig.3a,3b and Fig.4a,4b) providing p-site (or a-site?) Ribo-seq or QTI-seq coverage. I would like to ask if Ribo-TISH has the ability to provide such plots.

If not, may I know how do you manage to end up with the .bam/.bed file containing only the counts per p-site or a-site so that can be easily visualized on a genome browser.

Thanks in advance!

Kind Regards, Alex