run mistakes

[czppeter]

Traceback (most recent call last): File "/gss1/home/zpchen/miniconda3/envs/ribotish/bin/ribotish", line 56, in main() File "/gss1/home/zpchen/miniconda3/envs/ribotish/bin/ribotish", line 34, in main commands[cmd].run(args) File "/gss1/home/zpchen/miniconda3/envs/ribotish/lib/python2.7/site-packages/ribotish/run/quality.py", line 85, in run cdsBins = args.bins, numProc = args.numProc, verbose = args.verbose, geneformat = args.geneformat) File "/gss1/home/zpchen/miniconda3/envs/ribotish/lib/python2.7/site-packages/ribotish/zbio/ribo.py", line 980, in lendis for result in len_iter: File "/gss1/home/zpchen/miniconda3/envs/ribotish/lib/python2.7/site-packages/ribotish/zbio/ribo.py", line 942, in _lendis_trans for r in bam.transReadsIter(bamfile, t, compatible=False, maxNH=maxNH, minMapQ=minMapQ, secondary=secondary, paired=paired, flank=flank): File "/gss1/home/zpchen/miniconda3/envs/ribotish/lib/python2.7/site-packages/ribotish/zbio/bam.py", line 498, in transReadsIter for read in rds: #yield read File "/gss1/home/zpchen/miniconda3/envs/ribotish/lib/python2.7/site-packages/ribotish/zbio/bam.py", line 52, in fetch_reads if minMapQ is not None and read.mapping_quality < minMapQ : continue AttributeError: 'csamtools.AlignedRead' object has no attribute 'mapping_quality'