VCF file preparation for plate-based scRNA-seq

[dwkarjosukarso]

Hi, I am very interested in using Dendro for my scRNA-seq dataset which was generated using plate-based Celseq2 method. I have 4 different conditions, each 3 plates of 384 cells. How does the cell identification work within the pipeline? Do I need to make a separate VCF file per cell? Thank you very much for your answer.

Cheers, Dyah