cryodrgn
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Plot PC axis interpolation path in UMAP visualization
I've gotten the above feature request for figure-making purposes. I think it would be nice additional visualization to show the PC interpolation path in the pc*/umap.png plot produced by cryodrgn analyze.
Since the PC trajectories are never embedded with UMAP, there are two options for how we can visualize the path:
- Plot nearest data embeddings (fast). Maybe we can include an additional warning if the nearest data point is far from the PC axis.
- Run or rerun UMAP with additional PC axis trajectory points (slow)