Ellen Zhong
Ellen Zhong
What does the PCA look like? I do see some outlier clusters in the UMAP at the top and bottom. Maybe it's worth filtering those out (if they are indeed...
There should be additional error messages perhaps in a different log file that says why it was "Killed". If I had to guess, it would be that you ran over...
Thank you!!
Hello @cbeck22! If you're running into memory problems, I would make sure you're using a smaller decoder (e.g. 256x3) and decrease the batch size to `-b 4` or `-b 1`....
Correct, currently specifying `--ntilts X` in cryoDRGN-ET takes the min(X, min ntilts in the dataset). I agree with Michal that it probably makes more sense to separately create an index...
Hello Matthew! Sorry for the slow response, and thank you for providing the commands. It looks like your filtered training run points to `ind_bad.89709_particles.pkl`. Just want to double check that...