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Strain Prediction and Analysis with Representative SEquence

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This PR updates [ujson](https://pypi.org/project/ujson) from **1.35** to **5.8.0**. *The bot wasn't able to find a changelog for this release. [Got an idea?](https://github.com/pyupio/changelogs/issues/new)* Links - PyPI: https://pypi.org/project/ujson - Repo: https://github.com/ultrajson/ultrajson

This PR updates [pytest](https://pypi.org/project/pytest) from **4.1.1** to **7.3.2**. Changelog ### 7.3.2 ``` ========================= Bug Fixes --------- - `10169 <https://github.com/pytest-dev/pytest/issues/10169>`_: Fix bug where very long option names could cause pytest to...

This PR updates [urllib3](https://pypi.org/project/urllib3) from **1.24.1** to **2.0.3**. Changelog ### 2.0.3 ``` ================== - Allowed alternative SSL libraries such as LibreSSL, while still issuing a warning as we cannot help...

This PR updates [MarkupSafe](https://pypi.org/project/MarkupSafe) from **1.1.0** to **2.1.3**. Changelog ### 2.1.3 ``` ------------- Unreleased - Implement ``format_map``, ``casefold``, ``removeprefix``, and ``removesuffix`` methods. :issue:`370` - Fix static typing for basic ``str``...

This PR updates [pandas](https://pypi.org/project/pandas) from **0.23.4** to **2.0.2**. *The bot wasn't able to find a changelog for this release. [Got an idea?](https://github.com/pyupio/changelogs/issues/new)* Links - PyPI: https://pypi.org/project/pandas

This PR updates [requests](https://pypi.org/project/requests) from **2.21.0** to **2.31.0**. Changelog ### 2.31.0 ``` ------------------- **Security** - Versions of Requests between v2.3.0 and v2.30.0 are vulnerable to potential forwarding of `Proxy-Authorization` headers...

This PR updates [docutils](https://pypi.org/project/docutils) from **0.14** to **0.20.1**. Changelog ### 0.20.1 ``` =========================== Bugfix release. See HISTORY_ for details. ``` ### 0.20 ``` ========================= .. Note:: Docutils 0.20 is the...

This PR updates [Sphinx](https://pypi.org/project/Sphinx) from **1.8.3** to **7.0.0**. Changelog ### 7.0.0 ``` ===================================== Incompatible changes -------------------- * 11359: Remove long-deprecated aliases for ``MecabSplitter`` and ``DefaultSplitter`` in ``sphinx.search.ja``. * 11360: Remove...

This PR updates [numpy](https://pypi.org/project/numpy) from **1.16.0** to **1.24.3**. Changelog ### 1.24.3 ``` discovered after the 1.24.2 release. The Python versions supported by this release are 3.8-3.11. Contributors A total of...

This PR pins [numpy](https://pypi.org/project/numpy) to the latest release **1.24.3**. Changelog ### 1.24.3 ``` discovered after the 1.24.2 release. The Python versions supported by this release are 3.8-3.11. Contributors A total...