PEPPAN

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Hi I have used PEPPAN on my own .gff data files which were generated from prokka and there were no errors. I subsequently used PEPPAN_parser and again no errors were...

bharat1912

Hi, any plans to put PEPPAN in a conda repo for easier installation? Thanks!

iferres

Dear zhemin, Thanks for your work on PEPPAN. PEPPAN is a nice tool for pan-genome construction. I'm running PEPPAN on 7578 species-level genomes with 190 threads. However, after 6 days,...

zhenghualiu

Out of memory error

6

Dear Zhemin, Thank you for making PEPPA publicly available and for putting the publication on bioRxiv, it's a very nice read! I managed to install PEPPA successfully and tried to...

SWittouck

Hello, Let me start off by saying the tool looks great! I've had a major problem dealing with incomplete/mis-annotated/truncated genes in pangenome analyses, and no other tools have been designed...

cizydorczyk

Neighborhood based paralog splitting does not finish

2

For ~200 ~6Mb bacteria genomes, the neighborhood based paralog splitting step alone is taking over 24 hours on a c5.2xlarge EC2 instance, while the previous steps finished in a timely...

marade