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BrokenPipeError: [Errno 32] Broken pipe

Open verylili opened this issue 1 year ago • 1 comments

Hi, I was running PEPPAN on ~1700 E. coli genomes. I met an error as follows: Traceback (most recent call last): File "/home/LL/miniconda3/envs/PEPPAN/bin/PEPPAN", line 8, in sys.exit(ortho()) ^^^^^^^ File "/home/LL/miniconda3/envs/PEPPAN/lib/python3.11/site-packages/PEPPAN/PEPPAN.py", line 1916, in ortho filt_genes(tab_conn, np.load(params['self_bsn'], allow_pickle=True), params['global'], params['map_bsn']+'.conflicts.npz', priorities, gene_scores, encodes) File "/home/LL/miniconda3/envs/PEPPAN/lib/python3.11/site-packages/PEPPAN/PEPPAN.py", line 732, in filt_genes mat_out.append([pangene_name, gene_name, min_rank, mat]) File "", line 2, in append File "/home/LL/miniconda3/envs/PEPPAN/lib/python3.11/multiprocessing/managers.py", line 821, in _callmethod conn.send((self._id, methodname, args, kwds)) File "/home/LL/miniconda3/envs/PEPPAN/lib/python3.11/multiprocessing/connection.py", line 205, in send self._send_bytes(_ForkingPickler.dumps(obj)) File "/home/LL/miniconda3/envs/PEPPAN/lib/python3.11/multiprocessing/connection.py", line 410, in _send_bytes self._send(header + buf) File "/home/LL/miniconda3/envs/PEPPAN/lib/python3.11/multiprocessing/connection.py", line 367, in _send n = write(self._handle, buf) ^^^^^^^^^^^^^^^^^^^^^^^^ BrokenPipeError: [Errno 32] Broken pipe

verylili avatar Jun 16 '23 06:06 verylili

This error occurred on a server, not a personal computer. And I met the error when the number of genomes is large.

verylili avatar Jun 16 '23 06:06 verylili