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Published 20 hours ago • verified publisher icon zhanxw

Filter output: --pfilter

Open zx8754 opened this issue 5 years ago • 1 comments

Similar to plink: --pfilter [threshold].

https://www.cog-genomics.org/plink/1.9/assoc

--pfilter causes only associations with p-values no larger than the given threshold to be reported.

zx8754 avatar Sep 27 '18 11:09 zx8754

This looks like a good feature. But my concern is that some test outputs two p-values, one for analytic p-value, the other for permutation p-value. Maybe I should report if any of the p-values is no larger than the threshold. @dajiangliu

zhanxw avatar Dec 06 '18 06:12 zhanxw