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Can I Use ComBat-Seq to adjust multigroups RNAseq?

Open yirenheihei opened this issue 2 years ago • 0 comments

hi,I am confused to use the combat_seq to deal with my RNAseq data .I have two batchs and I have thress groups such as groupA vs groupB,groupA vs groupC.How I use the combat_seq? below is my code . group=c(rep(0,1,2),6) batch=c(rep(0,1),9) adjusted_counts=combat_seq(counts,batch=batch,group=group) is this right? thank you very much.

yirenheihei avatar Aug 11 '21 10:08 yirenheihei