TEsorter

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Hi~ TEsorter can be worked in animal genoem ?

2

Hi~ TEsorter can be worked in animal genome ?

zuodabin

ModuleNotFoundError: No module named 'RunCmdsMP'

2

Hi, rengang TEsorter is very cool!!!but I have a problem: I use `conda install -c bioconda tesorter` to install TEsorter in my linux server, I installed it successfully. The output...

2eYu

ValueError: invalid literal for int() with base 10: '0.5'

2

Hi, I encountered a problem which only showed up in 2 of my 6 LTR datasets. Below is the traceback. Could you please help out with this? -INFO- generating gene...

LeeYEAH2

How to analyze the effect of transposons on plant traits in de novo transcriptome assembly.

1

Hi @zhangrengang The species I am studying (a kind of Rhododendron) does not have a reference genome. Now I want to know how to analyze the effect of transposons ((mainly...

Wenwen012345

Exploring the transposition profile of specific LTRs

1

Dear Professor Zhang, @zhangrengang I apologize for disturbing you in your busy schedule. I know that LTR_Retriever and TEsorter are paired together, but the author of LTR_Retriever, Shujun Ou, seems...

shuren7

How to merge the TEsorter repeat libraires

18

Hey, thanks for the tool. How can I merge the output library of TEsorter with the repeatModeler repeat library to run RepeatMasker? Further, can I directly input the output library...

manoharbisht1998

Can TEsorter classify Class II elements(DNA transposons) into clade-level?

2

Hi @zhangrengang As the title, my TEsorter version is 1.4.6, I use TEsorter to classify my EDTA's outcome(my interested species is an apple species). my code: `TEsorter Gala_genome.fa.mod.EDTA.intact.fa -db rexdb-plant...

2eYu

Allocation into lineages for metazoan LTR-RTs

4

Hi Ren-Gang, This issue may partially overlap with previous questions, but I think it will help if it shows up separately here. Is there any progress/updates on allocating animal LTR-RTs...

alexandrosbousios

TEsorter genome.fasta -genome -p 20 -prob 0.9

1

Could I just use this model for type classification? Because I see that a lot of work should first identify repeat et al.

JianjiaDTU

Assistance with custom installation directory

5

Hi, I am looking into installing TEsorter into a custom shared python directory. I tried using: python setup.py install --prefix=$(NEW_PATH) and this created the following: ${NEW_PATH}/bin/* (containing the TEsorter and...

JKing2000