SubPhaser icon indicating copy to clipboard operation
SubPhaser copied to clipboard

ValueError: 0 kmer with fold > 2. Please reset the filter options.

Open z626093820 opened this issue 6 months ago • 1 comments

When I analyze using the default parameters, the following error occurs. What should I set the kmer parameters to?

23-12-30 15:24:20 [INFO] After filtering, remained 0 (0.00%) differential (freq >= 200) and 0 (0.00%) candidate (freq > 0) kmers Traceback (most recent call last): File "/home/zuozd/miniconda3/envs/SubPhaser/bin/subphaser", line 33, in sys.exit(load_entry_point('subphaser==1.2.6', 'console_scripts', 'subphaser')()) File "/home/zuozd/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.6-py3.8.egg/subphaser/main.py", line 797, in main pipeline.run() File "/home/zuozd/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.6-py3.8.egg/subphaser/main.py", line 422, in run d_mat = dumps.filter(d_mat, lengths, self.sgs, outfig=histfig, #d_targets=d_targets, File "/home/zuozd/miniconda3/envs/SubPhaser/lib/python3.8/site-packages/subphaser-1.2.6-py3.8.egg/subphaser/Jellyfish.py", line 502, in filter raise ValueError('0 kmer with fold > {}. Please reset the filter options.'.format(min_fold)) ValueError: 0 kmer with fold > 2. Please reset the filter options.

THANK YOU!

z626093820 avatar Dec 30 '23 07:12 z626093820