Fan Zhang

@tashrifbillah That's strange. Segmentation fault usually is related memory. This need to be debugged. Does his happen always or just for this dataset? We have performed a bunch of test...

Hi @josephmje Currently, we don't have a Dockerfile version yet. Thanks for the suggestion. At this stage, I would suggest a standard installation and seeing how it works for your...

Hi @anastasia-nik It looks like a disk spacing issue. Wonder how much space left on your hard drive? Also, how many vtk files here you are doing the QC? Regards,...

Sorry, accidentally close the the issue. Reopen now.

In this case, this is for sure not a disk space issue..... Can you share the anonymized vtk file somehow, so I can take a try. From the error message...

Hi @anastasia-nik I tested your data on my machine and the QC script works well for this data. Any chance you tried it on any other machines you can access?

Hi! Thanks for testing. Then this is an issue related to the OS. We will need to look into this and see if we can see the same error. At...

@nsomes Thanks! About your first question about wm_cluster_remove_outliers.py, this script takes the folder of fiber clusters of one subject as input, and considers the folder name as subject ID. Then,...

@nsomes For your second question about wm_append_cluster.py, our recent updates allow users to provide a file name using '-o'. If assigned, it will overwrite the default filename 'cluster_appended_XX.vtp'. https://github.com/SlicerDMRI/whitematteranalysis/blob/master/bin/wm_append_cluster.py#L20-L22 Please...

Just one possible reason, perhaps you used '.' (current folder) as input, so the script failed to identify the folder name. If you give the full path of the folder,...