Fixed paths in src/blasr/common.mk

[bgeigle]

The following paths point to installations on a local system.

HDF5INCLUDEDIR=/net/eichler/vol5/home/mchaisso/software/hdf/include/ HDF5LIBDIR=/net/eichler/vol5/home/mchaisso/software/hdf/lib

They can be found in the file src/blasr/common.mk

[zeeev]

hi @bgeigle,

Sorry for the slow reply. Thank you for the bug report. A temporary solution for those using RHEL:

sudo yum-config-manager --enable epel sudo yum -y install hdf5-devel

Since this is a submodule I'll have to figure our a monkey patch.

[lijingbu]

For a server without permission to do sudo install libraries, a solution is

install HDF5 library using conda, 1.8.20 works if other higher version doesn't. conda install -name smartie-sv hdf5=1.8.20

edit following lines in src/blasr/common.mk file, with your specific hdf5 paths.

HDF5INCLUDEDIR=/path/to/conda/env/hdf5/include HDF5LIBDIR=/path/to/conda/env/hdf5/lib LINK_PROFILER = /path/to/conda/env/hdf5/lib

them make