SpiecEasi
SpiecEasi copied to clipboard
zdk123
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
Hi Dr. Zachary Kurtz, I have a question for you, Is it correct to say after SPIEC EASI analysis or inverse covariance analysis, Negative associations can describe either mutually exclusive...
Hi there - just wanted some help with this. I am trying to run a cross-domain network analysis and was successful previously - but somehow, now its not working. Specifically,...
Hi, I am trying to install the package on my laptop (macOS Monterey 12.7.2) using the RStudio (Version 2023.12.0), but it failed to visit and download via the routine as...
https://rdrr.io/github/taowenmicro/ggClusterNet/src/R/corMicro.R, when i use ggclusternet , i found that ncpus parameter not working.Can you provide any suggestions?
Hi, I am trying to use SpiecEasi (latentcor branch) and I met that issue that I never got. I am using an older Matrix version to avoid other issues I...
Hi @zdk123, Since #73 is *closed* and also 'cos I'm not specifically using `phyloseq`, opening a new issue for the following ```bash Applying data transformations... Selecting model with pulsar using...
Hi, I wanted to know if it would be possible using Spiec-Easi to build networks of potentially interacting genes from transcriptomic data. I explain: I have one dataset of plant...
Things to fix: * Jobs are failing due to a missing dependency (rcmdcheck - shouldn't devtools be pulling this in? ) * Cache dependencies so builds don't take 20 minutes....
Hi there, I constructed a network at the family level for my microbial data set, but I want to color the dots by Phylum. I'm having a lot of trouble...