Chengzhi Zhao

Data sets must be numpy array or scipy.sparse.csr_matrix, received type <class 'anndata._core.views.SparseCSCView'>.

1

Hi, Thank you very much for the tool. When I run scanorama in python, I encounter the following error: Data sets must be numpy array or scipy.sparse.csr_matrix, received type ....

Should the reproduced image be exactly the same as the one in the article?

2

Hi, I have reproduced using the data mentioned in the article and although both the tSNE plot and the UMAP plot show that they can separate the cell taxa correctly,...

Can I use more than two dimensions as the input for Slingshot?

3

Hi, Thank you for producing and maintaining this package; it gives me a good insight into lineage trending. I have a question: Can I use more than two dimensions as...

How to produce directed minimum spanning tree?

1

Hi, Thank you for producing and maintaining this package; it gives me a good insight into lineage trending. I have a question: The object g_mst produced by StructDR seems to...