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Is the Escher widget compatible with JupyterLab 3?

Open danolson1 opened this issue 3 years ago • 9 comments

I can get the Escher widget to display correctly in JupyterLab v 2.2.6, but not in v. 3.0.11. In that version, I get an error message "Error displaying widget: model not found."

Has anyone else gotten the Escher widget to work in JupyterLab v3? Is this a known issue?

danolson1 avatar Apr 09 '21 03:04 danolson1

Same problem with JupyterLab 3.0.14

sorenwacker avatar May 21 '21 01:05 sorenwacker

same problem with Jupyter 3.0.16!! @danolson1 did you somehow manage to fix the issue in v. 3? or did you end up using v 2.2.6?

parsanayyara avatar Jul 20 '21 11:07 parsanayyara

I set up an environment with jupyterlab 2.2.6 for Escher work

-Dan

On Tue, Jul 20, 2021, 7:47 AM parsanayyara @.***> wrote:

same problem with Jupyter 3.0.16!! @danolson1 https://github.com/danolson1 did you somehow manage to fix the issue in v. 3? or did you end up using v 2.2.6?

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danolson1 avatar Jul 20 '21 12:07 danolson1

Ok, just tried using 2.2.6 instead. widget still not showing up, did I miss anything in my code? - I'm new to escher and jupyter, would really appreciate some help :)

image

parsanayyara avatar Jul 20 '21 12:07 parsanayyara

There are a lot of possible problems. I teach a Metabolic Engineering class to graduate students at Dartmouth College. I've attached the MS Word document that I use to help them get their environments set up as well as a Conda environment file. Give that a try and see how it goes.

-Dan

On Tue, Jul 20, 2021 at 8:48 AM parsanayyara @.***> wrote:

Ok, just tried using 2.2.6 instead. widget still not showing up, did I miss anything in my code? - I'm new to escher and jupyter, would really appreciate some help :)

[image: image] https://user-images.githubusercontent.com/77234398/126326737-df2ec48c-cbb4-4f90-8e06-3ba367a35d95.png

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danolson1 avatar Jul 20 '21 13:07 danolson1

That would be really helpful! Thank you so much. Although I can't seem to find the attachment.. @danolson1

parsanayyara avatar Jul 20 '21 14:07 parsanayyara

me21_v5.zip See if this works.

danolson1 avatar Jul 20 '21 14:07 danolson1

Yep, it works for me! I think the problem was probably in the conda set up. I seriously can't thank you enough!

parsanayyara avatar Jul 21 '21 00:07 parsanayyara

thanks for the help. i've been struggling with it today after some jupyter updates. I aslo had to install @jupyter-widgets/base before escher extension (otherwise, it wouldn't build) and reinstall @jupyter-widgets/jupyterlab-manager after escher extension.

meono avatar Oct 20 '21 11:10 meono