Yuec

Hi!I think we might fall in the same hole, I also met this problem but for me the case is I can't get the correct gene name (in my code...

> 如果ID和Accession或者Parent为分号分割，则不会识别Accession或者Parent，好像是这个原因，我不太记得了，这个问题好久了 感谢解答！！如果您有空的话 能麻烦您看一下我的这个问题吗？ https://github.com/tanghaibao/jcvi/issues/634#issue-2167830223 在这里面我不太清楚是我的cds文件有问题（我直接从fasta文件跑这个代码提取的： python -m jcvi.formats.fasta format --sep="|" myfile.fasta my.cds）还是我的bed文件有问题 再次感谢您的回复！！

Hi, I got the same warning with running DRAM v1.5.0, did you figure it out what could be the solution?

I run my command on a remote platform so it shouldn't be the database/installation issue, but now I don't have this error anymore after I made more space to store...

> I tried this again for the same genome using V11 (default installed by DRAM) and V12 (most up to date version available from dbCAN) to annotate a single genome...

hello people that fall into the same hole as I did: I tried DRAM1.5 and all issue solved

> python -m jcvi.formats.gff bed --type=gene --key=ID in.gff -o out.bed > 是不是应该将type改为mRNA，gene，transcript，一个基因有好几个CDS，为什么单独提取所有CDS 因为我的gff文件里只有cds信息 提取gene或者mrna的话就会提示Extracted 0 features。 我发现之前这么多warning是因为fasta的基因名和bed文件第四列不符合，修改之后虽然warning数量减少了 但还是有一个not in bed file，后续得到这样的结果： WARNING k141_1388814 not in anme_10_93.bed blastfilter.py:65 WARNING k141_1388814 not...