Ketian

Hi Alba, Minimac4 imputes each individual haplotype independently, so the imputation result of one sample will not be affected by other samples. The two approaches you mentioned should give you...

Thank you for your clarification. Eagle may augment the reference panel with inferred target haplotypes. I believe this feature is triggered by default when the number of target samples is...

No you don’t have to change your reference panel. Simply add the following option to your command line would work: `--myChromosome chr21 ` This is a latent option which is...

Hi. We have recently fixed a bug regarding some segmentation fault, and Minimac4 has been updated to version 1.0.1. Could you please check whether the software you are using is...

Estimated haploid allele dosage means that the probability of the haplotype carrying the alternative allele, given the observed (pre-phased) array genotype and the reference panel. In your screenshot, HDS=0.367,0.337 (previously...

Multithread option takes effect for imputation only. On Fri, Jul 28, 2023 at 4:06 PM Michelle Franc Ragsac, Ph.D. < ***@***.***> wrote: > I am trying to generate a custom...