Y

I couldn't get it to work. If anyone has a specific example of how AnnotSV works could they please post it? The Nextflow link to code is a bit complicated...

I think this means that the AnnotSV does not work with Singularity?

I can only put a Singularity on the cluster. Is there a way to use the Github repository and then a phenotype to genes file to make HPO terms?

I am running sos 0.23.4 for Python 3.10.10 and my version of python is 3.10.8.

When I run `sos --version` it tells me: sos 0.23.4 for Python 3.10.10

The code you mentioned: `pip list | grep sos` generates the following output: `jupyterlab-sos 0.9.0` `sos 0.23.4` `sos-bash 0.20.0` `sos-notebook 0.23.4` `sos-pbs 0.20.8` `sos-python 0.18.4` `sos-r 0.19.6`

I tried to update sos-r using the following command: `pip install sos-r -U` then I opened up SoS and tried to run one R command: `sessionInfo()` and I kept getting...

When I try ` pip install notebook==7.4.9 ` it says > ERROR: Could not find a version that satisfies the requirement notebook==7.4.9 (from versions: 4.0.0, 4.0.1, 4.0.2, 4.0.4, 4.0.5, 4.0.6,...

I did the following I updated the notebooks. Then I did: ``` pip install jupyter-client==7.4.9 ``` however, it does not change that I get the following error in SoS and...

I did a clean install of SoS. I then did the following command to see: `pip list | grep sos` I got the following: `jupyterlab-sos 0.9.0` `sos 0.24.0` `sos-bash 0.21.0`...