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Published 20 hours ago • verified publisher icon yjx1217

Installing PerlIO::gzip failed

Open greenkidneybean opened this issue 1 year ago • 4 comments

I'm installing LRSDAY-v1.7.1 on Ubuntu 22.04.2 LTS. Running install_dependencies.sh raises the error "! Installing PerlIO::gzip failed.", I've tried passing the --force flag into misc/cpanm but I still get the same error.

Here's the build.log, any input for troubleshooting would be greatly appreciated, thanks!

greenkidneybean avatar Mar 07 '23 18:03 greenkidneybean

Dear Michael,

Thanks for trying out LRSDAY. Regarding the error message that you encountered, this post (https://stackoverflow.com/questions/36374267/how-to-fix-fatal-error-zlib-h-no-such-file-or-directory) should help. LRSDAY relies on a number of prerequisites (https://github.com/yjx1217/LRSDAY/blob/master/prerequisite.txt), most of which should have been pre-installed for Linux-based servers, but if you are working with a fresh Linux machine, you will need to install these prerequisites first.

BTW: I've just pushed a few new changes as the upcoming v1.7.2 update yesterday, so maybe you can use git clone https://github.com/yjx1217/LRSDAY.git to download and install v1.7.2 instead.

Best, Jia-Xing

yjx1217 avatar Mar 08 '23 06:03 yjx1217

Hi Michael (@greenkidneybean) ,

Just to check if the the solution posted above solved your problem. And FYI, a formal release of v1.7.2 is now available at https://github.com/yjx1217/LRSDAY/releases/tag/v1.7.2 .

Best, Jia-Xing

yjx1217 avatar Mar 20 '23 13:03 yjx1217

Hi Jia-Xing,

Thank you for checking-in! Your suggestion worked for all the Perl installations but I then got hung up on solving the Conda environments. I was going to try updating Conda or try Mamba.

~Michael

On Mar 20, 2023, at 9:53 AM, Jia-Xing Yue @.***> wrote:

 Hi Michael @.***) ,

Just to check if the the solution posted above solved your problem. And FYI, a formal release of v1.7.2 is now available at https://github.com/yjx1217/LRSDAY/releases/tag/v1.7.2 .

Best, Jia-Xing

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.

greenkidneybean avatar Mar 21 '23 23:03 greenkidneybean

Hi Michael,

Yes, conda could be a headache ... :-( Try to mask out the system-level-installed conda (if exists) from your $PATH might help.

Best, Jia-Xing

yjx1217 avatar Mar 22 '23 02:03 yjx1217