Ying Zhang

Is there a way to pull out the stability index matrix from the SC3 object?

7

Hi, I am wondering whether there is a way for me to run function calculate_stability to get the stability index matrix? I tried this function in SC3_1.7.6 and SC3_1.3.18, neither...

KeyError during falcon_kit.stats_preassembly job

4

Hi, Developer, I had a very weird error. When I ran Falcon on a set of 8 SMRT cells, job done, no problem. However, when I ran Falcon on 25...

Code outdated

6

Hi, I am willing to try your code for a 10x scRNA-Seq analysis. However, in the latest V2 chemistry, they changed the design of barcodes, R1 and R2 reads. In...

Mouse or human (?) for option "species"

1

Hi, I encountered a weird issue while running BayesPrism. I am working on Mouse data, and the gene names are in the following format: ``` > head(colnames(sc.dat)) [1] "ENSMUSG00000109644" "ENSMUSG00000007777"...

Can't follow the tutorial for Slide-Seq

1

Hi, help, I tried to follow the Slide-seq vignettes, but I got stuck at the very beginning. See the error below: ``` > slide.seq