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Deep learning for identifying cis-regulatory elements and other applications

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Thanks for putting all of your data online. In the file(main_deep_feat_select_DBN.py),you changed the address with path="/home/yifengli/prog/my/deep_learning_v1_0/" os.chdir(path) And,defines the path of the data with ''data_dir="/home/yifengli/prog/my/deep_learning_v1_0/data/" Please tell me, where is...

Many paths are hard-coded, e.g. `path="/home/yifengli/prog/my/deep_learning_v1_0/` in **main_mlp.py**. Could these be refactored to use relative paths and the `data` directory to make it easier to rerun these examples?

Hello. Could you please tell me how to apply your method to classify fasta files? Do you have some extra programs to extract features?

Howdy! Thanks for putting all of your data online. I can see that the regions file contains all of the regions in the data file, but does the first region...

(your **Pyhton** path ) in your README.txt :)