Zee Wu

Hi Jeremiah, I also want to know how to trans the BNDs to known SV type like DUP,INV,TRA,DUP, at least for some BND that can be transformed. I cannot understand...

@walaj Thank you very much! I deleted the question because I thought I got the right understanding about the VCF specification on BND, but soon became uncertain about my comprehension,...

The number of cells varied across clusters, most of them have hundreds of cells. ``` > sort(table(x.sp@cluster)) 10 11 2 12 13 6 1 4 3 9 7 8 5...

@qingnanl , thank you! I am also not sure if it is ok to tune bcv. I followed the vignette of 10X Adult Mouse Brain, in which the author indicated...

I have the same question. Why the book and this github can use steps_per_echo = 100, which is > smaple_size//batch_size. And showed a successful run? Is this because of tf...

> As a general approach to this kind of problem, I write functions like this: > > ```python > def grouped_obs_mean(adata, group_key, layer=None, gene_symbols=None): > if layer is not None:...