[Bug?]: `yarn up` should ignore file/link protocols

[twavv]

Self-service

• [ ] I'd be willing to implement a fix

Describe the bug

I'd like to be able to run yarn up "*" but it currently fails on file: protocol packages. It also removes the link:./src entry (trying to install the package from the NPM registry).

To reproduce

(FYI, the https://yarnpkg.com/advanced/sherlock link is broken)

// package.json
{
  "name": "reproduction",
  "dependencies": {
    "foo": "file:./deps/foo.tgz"
  }
}

Environment

System:
    OS: macOS 14.2
    CPU: (8) arm64 Apple M1 Pro
  Binaries:
    Node: 20.9.0 - /private/var/folders/gg/_s_s32pd1fzfmgk_kcfk1sgm0000gn/T/xfs-e251739a/node
    Yarn: 4.0.2 - /private/var/folders/gg/_s_s32pd1fzfmgk_kcfk1sgm0000gn/T/xfs-e251739a/yarn
    npm: 10.1.0 - ~/.asdf/plugins/nodejs/shims/npm

Additional context

No response