Yaroslav Halchenko

TODOs - [ ] review current fails and ideally address as much as possible - [ ] switch to 3.9 (might be a follow up PR)

If a directory a bare git repository, `datalad save` happily adds all its files into super's git

5

#### What is the problem? ```shell $> datalad add -d . project add(ok): project/HEAD (file) add(ok): project/annex/index (file) add(ok): project/annex/index.lck (file) add(ok): project/annex/journal.lck (file) add(ok): project/annex/sentinal (file) add(ok): project/annex/sentinal.cache (file)...

Bare repositories are not supported by direct manipulations DataLad

2

#### What is the problem? our GitRepo passes `**kwargs` to underlying GitPython's Repo, which does support `bare`. And we make use of that in a few tests, but in general...

ENH: config.patch context manager

4

CLI has `datalad -c var=val ` which makes `var=val` in effect only for the duration of that `datalad` call. In Python API AFAIK we do not have such a convenience,...

test_save_dotfiles started to fail on Windows!

2

e.,g in https://ci.appveyor.com/project/mih/datalad/builds/50552167/job/vkvki9y0jj2l5ccp ``` FAILED ..\datalad\core\local\tests\test_save.py::test_save_dotfiles[False-None] - AssertionError: unexpected content of state "modified": [WindowsPath('C:/DLTMP/datalad_temp_tree_vex8wu7k/nodot')] != [] assert [WindowsPath(...8wu7k/nodot')] == [] Left contains one more item: WindowsPath('C:/DLTMP/datalad_temp_tree_vex8wu7k/nodot') Full diff: - []...

CLI: cannot explicitly set boolean (reckless) or None (reckless or fulfilled)

3

despite error message suggesting to be able to do so ```shell $> datalad install --reckless= ds000001 usage: datalad install [-h] [-s SOURCE] [-d DATASET] [-g] [-D DESCRIPTION] [-r] [-R LEVELS]...

non-readable python files in a container

3

### What happened? origin: - https://github.com/ReproNim/containers/issues/118 Since 23.1.1 (ok in 23.1.0) converted to singularity image is not usable due to .py files being not given read permissions to anyone but...

Is it possible to not hardcode HOME in Dockerfile?

2

ATM https://github.com/nipreps/mriqc/blob/master/Dockerfile#L164 ``` ENV HOME="/home/mriqc" ``` which then gets inherited also within singularity container we convert docker container into in https://github.com/ReproNim/containers so it is "hardcoded" even if I would run...

Add a few more tests for the schema

1

- "explicit better than implicit" especially in case of tests when test fails - very hard to debug. hopefully more of checks would help

[ENH] Formalize presence of optional logs/ folder

1

It is quite often desired to store logs, e.g. simply stdout/stderr from invocation of BIDS converters or other tools which were used to produce/change content in current BIDS datasset. They...