Yaroslav Halchenko

bids extractor - sidecar .json files have no bids info

3

with current master 0.2.0-11-gb3d8897 (and new reworked metadata handling in revolution 0.9.0-183-g8765949, pybids seems to be 0.8.0) saw that side car files have only `datalad_core` extractor records: ```json { "datalad_core":...

bids extractor: succeptable to symlinks in the path

1

#### What is the problem? it seems that somewhere paths resolution/matching is happening and symlinks in the path gets resolved but not "consistently", which results in tests failing for me...

participants.tsv information is silently not embedded?

2

#### What is the problem? on ds000201 which is a bit "damaged" by the crawling (some tarballs content seems should have gone under derivatives - yet to fix), but with...

0.10.0 conda package is still strugling to get built properly for python2 (ok for python3s) due to lack of securestorage due to lack of old fashioned dbus python bindings.

Would require Debian packages for - [x] datalad - [ ] grabbits - [ ] pybids

support DICOMs tarballs

1

It is quite common to have dicoms (e.g. for a single sequence) .tar or .zip balled. I wondered if we could/should make it possible to extract/aggregate metadata from those. I...

Add optional "regex" to be used along with dtype "text"

2

ATM I have not spotted any ability in schema to constrain "text" values. Logical choice to provide such constrain would be a regular expression (note: there is a number of...

Attribute(s) to contain license (and copyright) for the .nwb file

1

Although licensing of data is still quite a wild west, I would be highly beneficial for .nwb to provide a formal specification to specify a license(s) (and thus a copyright,...

An attribute (or dataset?) list software/library which produced that file/dataset etc

29

I run into situations where it would have been useful to know which tool, and of what version, has produced a given .nwb file. I have looked into a h5dump...

Provide issue template(s) for people to seek feedback on "NWB enhancement" possible new NDX

1

github allows for templating entry of different types of issues. See e.g. https://github.com/bids-standard/bids-specification/tree/master/.github/ISSUE_TEMPLATE for various types BIDS has. @rly mentioned that it is typical for people to first ask here...