Yaroslav Halchenko

internal git files got placed into generic files: section by --trace

1

full log: http://www.onerussian.com/tmp/20190425143333-d4.reproman.yml and the command was ``` reproman execute -r localshell --trace -- python -m nose -s -v reproman/tests/test_api.py ```

clarify new (3.x) singularity ability to get images with @digest specification

3

See https://github.com/ReproNim/reproman/pull/405#issuecomment-482228428 for initial finding/discussion

FOI: YAML schema/validation

1

I was looking around for ways to specify schema for YAML so it could be validated... still searching for an optimal tool, but it might be that we end up...

OPT: separate out specification from implementation modules

1

One of the reasons for slow initial import here and in datalad is that all those modules defining subclasses of `Interface` also provide implementation for them. Implementation is often implemented...

We just need to tell subparser to not parse for keyword args after the first positional argument is encountered.

parallel computation submission example use cases

1

To be used to collect sample use cases we should facilitate with "reproman run" ### fmriprep on slurm using singularity image https://gist.github.com/oesteban/5947d28caf6c3750e0a2f2aa09102702

e.g. ATM for ssh backend we need to define name which would probably match the hostname and specify port as `port=`. Would be nice to have something like just `create...

ls fails with ResourceError: Failed to import resource: No module named ssl_match_hostname [ssladapter.py:<module>:21]

5

smells like some incomplete versioned dependency within fabric/paramiko but yet to figure it out ```shell $> pip install -e . Obtaining file:///home/yoh/proj/repronim/niceman Requirement already satisfied: appdirs in /usr/lib/python2.7/dist-packages (from niceman==0.1.0)...

ATM - conda would provide a full list of pkgs in the environment even when only a single file is "retraced" - debian/rpm/... would list only the packages containing the...