Yaroslav Halchenko
Yaroslav Halchenko
At the moment I see a bulk of examples but probably many code pieces in there could be used to compile a unittests battery. Probably majority of those would depend...
Running following reproducible script (make it into a smoke test?! data is already defaced so either bidsonym should crash informing about that or at least should try to deface I...
I think the initial issue reported in #23 was addressed. I ran the "latest" docker image (converted to singularity) and it didn't choke, moreover produced reproducible output which is great!...
would be happy to chat more, but in a nutshell - accept `all` and a list of desired defacers to run - make use `_desc-` from bids common derivatives to...
Please see initial issue https://github.com/nipy/heudiconv/issues/457#issuecomment-634909468 : in heudiconv, even without using --datalad option, we make produced "raw" files read-only to prevent accidental unintended changes. That report points to the fact...
``` ~/proj/nuisance/data/dbic-deid$ singularity run --cleanenv envs/bidsonym_latest.sif sourcedata participant --participant_label=sid000003 --deid pydeface Making sure the input data is BIDS compliant (warnings can be ignored in most cases). This dataset appears to...
Would be nice if there was at least some regression testing automatically ran by ci
Running ``` ~/proj/nuisance/data/dbic-deid$ singularity run --cleanenv envs/bidsonym_latest.sif sourcedata participant --participant_label=sid000003 --deid mri_deface ``` lead to the crash (sorry -- not cut pasting - needs sensoring of paths) unable to find...
- LICENSE is empty within setup.py - doc/license.rst has heading "Modified BSD License" which is usually associated with 3-clause BSD license (see pedia.org/wiki/BSD_licenses) but actual text adds a non-profit use...
Relates to #40 asking for the option to simply remove progress bar upon completion. I guess I could accomplish it if #40 was possible, by redoing entire line myself. But...