Yaroslav Halchenko

current combinatorics of the cmdline specifications lead to suboptimal reporting of incorrect specification

1

in all of those cases I expect us to report usage synopsis with some informative message instead of code tracebacks: examples: - [x] no options specified whatsoever: ```shell $> heudiconv...

WiP Convergence on the use-cases analysis

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# Original/conventional Heudiconv operation - Overall a two stage procedure 1. **prepare** the conversion table for an accession using a heuristic (need `-c none` to run in this mode) -...

Now that it is a package, would be easy to add basic duecredit support, with also entries for external tools we use (dcm2niix)

got ``` ./sub-testme/func/sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-1_bold.json Evidence: sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-1_bold.json ./sub-testme/func/sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-1_bold.nii.gz Evidence: sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-1_bold.nii.gz ./sub-testme/func/sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-2_bold.json Evidence: sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-2_bold.json ./sub-testme/func/sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-2_bold.nii.gz Evidence: sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-2_bold.nii.gz ./sub-testme/func/sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-3_bold.json Evidence: sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-3_bold.json ./sub-testme/func/sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-3_bold.nii.gz Evidence: sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_echo-3_bold.nii.gz ./sub-testme/func/sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_events.tsv Evidence: sub-testme_task-rest_acq-cmrrXmbep2d_rec-s2p2-pF_events.tsv ``` from validator and was wondering what...

Ran into while building for nd90 (in addition to #400): ``` def test_load_json(tmpdir, caplog): E fixture 'caplog' not found > available fixtures: cache, capfd, capsys, doctest_namespace, monkeypatch, pytestconfig, record_xml_property, recwarn,...

new option to ignore/overwrite .heudiconv/ conversion information/assignment

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e.g. so we could re-convert data within the same dataset without using original paths. may be smth like `--ignore-heudiconv`

Provide flexible support for multi-volume sequences

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Such as PD+T2w pairs, and possibly new fancy sequences from GE. See https://github.com/nipy/heudiconv/issues/144#issuecomment-492726073 for the initial discussion etc. ATM we do support multi-echo and hardcoded _PDT2 (added in #345) but...

I had another idea about #344 one, but I guess we could get to it after this PR is merged . If I get to it I will work on...

A way to add additional DICOM fields, which might have been filtered out by dcmstack

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ATM we use dcmstack to extract additional (when not `--min-meta`) metadata from DICOMs. One of the pains is that it takes **long** time, probably partially because if I read https://github.com/nipy/heudiconv/blob/master/heudiconv/dicoms.py#L405)...