Yarden Katz
Yarden Katz
> A trace with linebreaks would be great for user-inspection! Next time I get an error, the line number will actually mean something, instead of being `line 0, character 954357852515`...
> How do you compress something that doesn't exist yet? Don't you have to first create the trace block, then compress it? Or can the trace block come into being...
Why use easy_install inside a virtualenv? Have you tried pip? I install it with pip/virtualenv and the scripts then get placed in executables that should be in your `PATH` (assuming...
Hi Olga, You can use the existing code to create events from GTF by first converting the GTF of interest (e.g. Gencode) to a genePred format, and then feeding it...
What operation on GFFs are you trying to do? Are you making gene annotations for a GFF? I think `annotate_events.py` is deprecated. I just checked in code to remove that...
You first gff_make_annotation and then annotate the resulting GFF with genes. The table argument to gff_make_annotation is a genePred UCSC table. Keep in mind rnaseqlib is unpublished code, basically personal...
Is there a Laverna chrome extension?