Yannick Wurm

slider with 3 pre-determined "search stringencies"

13

Provide a slider that lets users choose between 3 presets. These would populate the advanced params: - normal --> default - highly similar sequences (specificity?) --> Evalue cutoff at e-3;...

nginx "entity too large" error is ugly/not user friendly

2

(here my query was 2 fasta seq for combined length of ~1580380 nt) 

We previously discussed potential alternatives to BLAST - namely in the form of HMM-searches. An approach which could be relevant would be best based on HHBlits or equivalent (includes uniprot-derived...

Group nucleotide databases based on admin-supplied keywords

7

Some hurdles may be met if there are many databases. This is already becoming clear on fourmidable. One idea could be to add a "Select all" button. A more elegant...

Cheers & keep up the good work

.zcompdump files

3

there's a lot of these files in my home dir. Is that oswitch? and can I delete them? Can we avoid generating them?  

Issue if carrying over UID that already exists

2

``` bash Yannick@ybook ~/g/automarking> oswitch r-base master? Sending build context to Docker daemon 5.632 kB Sending build context to Docker daemon Step 0 : FROM r-base Pulling repository r-base ae89439e8e1c:...

when exiting, `pwd` should be transferred

1

currently you end up back where switch was launched

Similarly to how .ruby-version files are autodetected by chruby and rvm. (can be very helpful for setting a project-specific docker image)

/Volumes isn't mounted

12

(actually the directory doesn't even exist) on my mac - not visible in /mnt either.