Yan Gao
Yan Gao
Thanks for the clarification! abPOA did have an option to output consensus sequence with the most common/frequent base at each position, but was removed now. Right now, the consensus sequence...
The latest abPOA has an option to chose a different consensus calling method: `-a1`, which selects the most frequent base at each position. The default is still heaviest bundling. ```...
Hi Jiaan, Thanks for the information. Actually I wasn't aware of this "input-number-dependent" performance difference. This is interesting to me. I guess you have a template sequence as the ground...
Hi, if you can share a few example input datasets, I think I may be able to give you some suggestions in terms of parameters.
I am not sure the scenario you specifically refer to. Since you mentioned wtdbg2, if you need a consensus sequence after the assembly step, I think wtdbg2 has its own...
For your data [H2-s218243_1350.fasta.zip](https://github.com/yangao07/abPOA/files/15175950/H2-s218243_1350.fasta.zip), I see the read lengths varies a lot and they are not from the same strand. Since I don't know how you obtained this cluster of...
I also met the same error recently. Then I found that it was related to the `conk`. Maybe you can try to re-install it.
Can you give a brief specific example?
I am not sure what you want exactly. For this example, which part of the result do you need/not need?
`-l`/ `--longest` will only output the tandem repeat that covers the longest sequence. That may work for your case.