ig_repertoire_constructor

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Add special "excluded" read state and process it (somehow) in ALL tools. Requires special discussion with ALL team members. For now omitted reads are considered as singletons.

eodus

Add optional repertoire compression before analysis

eodus

yana-safonova

yana-safonova

Make ig_trie_compressor generate quality as sum of qualities

1

Chushuhuch

yana-safonova

Use compressed formats for intermediate stages

1

Using gzipped fasta/fastq files could reduce the number of disk operations and hence speed up processing. Lower space consumption is also a good option

eodus

Quality may be useful in clustering

eodus