QUEEN

QUEEN copied to clipboard

"AttributeError: 'ExactPosition' object has no attribute 'position' when using QUEEN(seq='...')" in Colab

2

When running the Example code 1 (Create a QUEEN class object (blunt-ends), dna = QUEEN(seq="CCGGTATGCGTCGA")) in Colab, I now get the "AttributeError". This error has probably occurred between 20-25.12 2023....

OMTikker

Hi @ponnhide, The `flipdna()` function against a QUEEN instance breaks `visualizeflow()`. Here's a minimal example. This works without any errors (No flow map would be visualized though). ``` M13F =...

abs-yy

visualizemap does not indicate overhangs

1

```python from queen import * fragment = QUEEN(seq="CCGGTATGCG----/----ATACGCAGCT") fragment.printsequence(display=True) fig = visualizemap(fragment, seq= True ) fig = visualizemap(fragment, seq=True, rcseq = True) ```  I'd expect overhang bases to be...

jan-glx