Xu Zou
Xu Zou
KP.3.2+C1093T+A6276G(Orf1a:K2004R)+C21077T, A22474T(Orf1b:T2537I, S:K304N) GISAID query: C1093T,A6276G, A22474T No. of seqs: 8(USA 5 Canada 3) First: EPI_ISL_19200421, USA, 2024-5-24 Latest: EPI_ISL_19241320, USA, 2024-6-24 [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice88_genome_test_220b_a24580.json?label=id:node_5459620) 
LB.1.3+C9163T, A22107G(S:K182R) GISAID query: C18131T,C9163T,A22107G,-16386 No. of seqs: 7(Netherlands 2 France 3 Israel 1 Belgium 1) First: EPI_ISL_19205794, 2024-5-28, France Latest: EPI_ISL_19242728, 2024-6-30, Israel [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice29_genome_test_26a0_dfd530.json?label=id:node_5645163)  With a singlet with...
KP.4+C10969T, A26579G,C23277T(S:T572I)+G174T+G22865T(S:A435S) 2 of the recent French seqs have their Orf10 start codon destroyed. GISAID query: G22865T,C23277T,G174T No. of seqs: 7(Canada 1 UK 1 USA 2 France 3) First: EPI_ISL_19044025,Canada,...
KP.3.1.4+G20060T, T21653C, C27595T, C29370T(Orf1b:S2198I, S:S31P, Orf7a:P68S, N:T366I) GISAID query: G20060T, T21653C, C27595T, C29370T No. of seqs: 17(Australia 9 Canada 2 New Zealand 1 UK 1 USA 1 Singapore 3) First:...
LF.2+T4660C+G26888A+C3743T,C14491T, C22329T(Orf1a:H1160Y, S:S256L) GISAID query: G26888A,C22329T,C3743T No. of seqs: 22(Canada 1 Netherlands 1 USA 2(from Germany) France 18) First: EPI_ISL_19189751, France, 2024-5-21 Latest: EPI_ISL_19257049, France, 2024-6-24 [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice154_genome_test_151ba_201c00.json?label=id:node_5650877) 
LB.1.3+G24872A(S:V1104I) GISAID query: G24872A, C18131T, G22111T No. of seqs: 6(USA 1(from France) Ireland 1 Sweden 4) First: EPI_ISL_19272675, Ireland, 2024-7-5 Latest: EPI_ISL_19291371, Sweden, 2024-7-20 [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice212_genome_test_35b05_b09810.json?label=id:node_5684241) 
KP.3.1.1+T15567C, A23723G(S:S721G) GISAID query: T15567C, A23723G, C12616T No. of seqs: 6(Denmark 3 USA 2 (from Germany), Sweden 1) First: EPI_ISL_19299670, 2024-7-8, Denmark Latest: EPI_ISL_19300567, 2024-7-18, USA from Germany Usher places...
This S98F seems to be a new convergent site. KP.2.3(with 31del)+C28714T+C20233T(Orf1b:P2256S)+C11575T+T15207C,C21855T(S:S98F) GISAID query: C21855T,C28714T, C20233T No. of seqs: 16(USA 4 Canada 12) First: EPI_ISL_19193291, 2024-5-29, USA Latest: EPI_ISL_19330086,2024-8-6, Canada [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice7_genome_test_602d0_ac5a50.json?label=id:node_5529419)...
It seems that like S:S31del, there is also lots of S:F32del branches emerging. As it is basically having similar function as S:S31del, DeFLiRT/DeFLuQE still works. ```[tasklist] ### Tasks - [x]...
KP.2.3(with 31del)+C28714T+C25611T+C21762T(S:A67V) GISAID query: C28714T,C25611T, C21762T, C22000A No. of seqs: 38(Japan 3 UK 1 USA 34) First: EPI_ISL_19190612, 2024-4-11, Japan Latest: EPI_ISL_19294310, 2024-7-17, USA [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice175_genome_test_35b05_b09800.json?label=id:node_5501028) 