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Now that I manually downloaded the weights to avoid issues with the HPC. I tried to continue the processing from the old MSA I had generated with `colabfold_search.sh` with `colabfold_batch`,...

Just to update, I was trying to run a complex, so this error disappears when adding the first line starting with `#` as @martin-steinegger indicates in a [recent comment](https://github.com/sokrypton/ColabFold/issues/76#issuecomment-981318943) in...

Any update on this? Thanks

Same issue here. Any word from the devs?

About 2 weeks ago, `ucsc-pslcdnafilter=445` was made available in bioconda. I've updated it in my `funannotate` conda environment (`mamba install "ucsc-pslcdnafilter=445"`) and it doesn't complain about the libs any more....

Try running this before running funannotate: ``` export FUNANNOTATE_DB=/path/to/funannotate/db ``` Alternatively, you can add a couple of files in your conda environment so the `FUNANNOTATE_DB` variable is set automatically when...

I have a potentially similar issue wwood/singlem#156 - or similar to #780, which is usually fine once the input files have ~10M sequences. I tested in Ubuntu 22.04 with AMD...

Any update on a version 6-compatible release?

Do you have an ETA? or even when the web version for eggNOG 6 will have the option for batch searches?

The seq data is pretty normal and new: standard Illumina MiSeq 2x300 library just sequenced (received last week). I ran `ShortRead::readFastq` on the whole read set again many times and...