Particle Picking module doesn't work(008

[Chrisleowoo]

Thanks for presenting this excellent work!

There is an error when reproducing, and I have tried too many times with googling and searching on stackoverflow, however it hasn't been addressed.

The error looks like this: terminal outputs that point2model doesn't exist, what's the reason?

(aitom) root@autodl-container-1c794199d2-3cea689b:~/aitom/doc/tutorials# python 008_particle_picking.py sigma1=2 file has been read partition num (6, 6, 2, 3, 2) (0, 0, 0) (0, 0, 1) (0, 1, 0) (0, 1, 1) (0, 2, 0) (0, 2, 1) (0, 3, 0) (0, 3, 1) (0, 4, 0) (0, 4, 1) (0, 5, 0) (0, 5, 1) (1, 0, 0) (1, 0, 1) (1, 1, 0) (1, 1, 1) (1, 2, 0) (1, 2, 1) (1, 3, 0) (1, 3, 1) (1, 4, 0) (1, 4, 1) (1, 5, 0) (1, 5, 1) (2, 0, 0) (2, 0, 1) (2, 1, 0) (2, 1, 1) (2, 2, 0) (2, 2, 1) (2, 3, 0) (2, 3, 1) (2, 4, 0) (2, 4, 1) (2, 5, 0) (2, 5, 1) (3, 0, 0) (3, 0, 1) (3, 1, 0) (3, 1, 1) (3, 2, 0) (3, 2, 1) (3, 3, 0) (3, 3, 1) (3, 4, 0) (3, 4, 1) (3, 5, 0) (3, 5, 1) (4, 0, 0) (4, 0, 1) (4, 1, 0) (4, 1, 1) (4, 2, 0) (4, 2, 1) (4, 3, 0) (4, 3, 1) (4, 4, 0) (4, 4, 1) (4, 5, 0) (4, 5, 1) (5, 0, 0) (5, 0, 1) (5, 1, 0) (5, 1, 1) (5, 2, 0) (5, 2, 1) (5, 3, 0) (5, 3, 1) (5, 4, 0) (5, 4, 1) (5, 5, 0) (5, 5, 1) 3691 particles detected, containing redundant peaks peak number reduced to 1573 T=m+t*(M-m)/20 T=-1.859648 m=1.082458 t=3.000000 M=-18.531582 DoG done, 1000 particles picked [{'uuid': '1447f963-8b95-4b07-b707-387f095d4b4e', 'val': -18.53158187866211, 'x': [52, 78, 18]}, {'uuid': '2d0e899d-4fc1-4700-b912-46668aa6b152', 'val': -7.802406311035156, 'x': [111, 231, 59]}, {'uuid': '61069558-935a-4d8e-a153-84e9ed8564d8', 'val': -7.356437683105469, 'x': [40, 180, 40]}, {'uuid': 'c1074f77-2c69-4a2f-9b1a-7b4eae26f988', 'val': -7.14599609375, 'x': [59, 139, 44]}, {'uuid': '79bf4582-46ab-441f-a292-1b590c609242', 'val': -6.927955627441406, 'x': [200, 231, 79]}] Save subvolumes .pickle file to: demo_single_particle_subvolumes.pickle generating /tmp/3dmod-points--5535779a-fb0b-11ee-a41d-2329819c1e8c /tmp/3dmod-points--5535779a-fb0b-11ee-a41d-2329819c1e8c: 1: point2model: not found Traceback (most recent call last): File "/root/aitom/doc/tutorials/008_particle_picking.py", line 138, in <module> main() File "/root/aitom/doc/tutorials/008_particle_picking.py", line 134, in main display_map_with_lines(l=l, map_file=path) File "/root/.local/lib/python3.9/site-packages/aitom-0.0.1-py3.9-linux-x86_64.egg/aitom/pick/plot/particle_location_display_imod.py", line 65, in display_map_with_lines assert os.path.isfile(model_file) AssertionError