Prodigal output as starting point of downstream analysis

[kunaljaani]

Hello, Thank you very much for such a cool pipeline. I used it for MAGs using this suggestion https://github.com/xuechunxu/DiTing/issues/9#issuecomment-997932469. But renaming the MAGs according to the fastq file works when you have limited samples or don't have sample replicates. Now, I have obtained protein and nucleotide ORF from prodigal for over 5000 MAGs and I would like to know whether I can use it as input for the DiTIng pipeline for further downstream analysis.

Thank you Kunal