Diting on MAGs

[KennLu2914]

Dear developer group,

Great tool, I am immensely enjoying using it, especially the cycle pathway group in the tab file. I am just wondering if it is possible to take fa file from MAGs or bins, for annotation purposes only?

Cheers

[xuechunxu]

Hey,

DiTing cannot do this. I know a tool METABOLIC can do this (AnantharamanLab/METABOLIC: A scalable high-throughput metabolic and biogeochemical functional trait profiler (github.com)https://github.com/AnantharamanLab/METABOLIC).

Enjoy it. 发件人: @.> 发送时间: 2022年12月13日 8:28 收件人: @.> 抄送: @.***> 主题: [xuechunxu/DiTing] Diting on MAGs (Issue #25)

Dear developer group,

Great tool, I am immensely enjoying using it, especially the cycle pathway group in the tab file. I am just wondering if it is possible to take fa file from MAGs or bins, for annotation purposes only?

Cheers

― Reply to this email directly, view it on GitHubhttps://github.com/xuechunxu/DiTing/issues/25, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AFUHDPGRJCNDDMFZESBAXULWM67LHANCNFSM6AAAAAAS4SH7DQ. You are receiving this because you are subscribed to this thread.Message ID: @.***>

[KennLu2914]

Thanks xuechun,

Right, I used METABOLIC-G, but it just missed some annotations from the methane production pathway. It would be good if diting can be separated into modules with each step can be executed in each module.

Cheers, all the best!

[xuechunxu]

Another tool might be what you want (KEGG-decoder/KEGGDecoder at master ・ kangluyao/KEGG-decoder (github.com)https://github.com/kangluyao/KEGG-decoder/tree/master/KEGGDecoder).

发件人: @.> 发送时间: 2022年12月13日 8:35 收件人: @.> 抄送: chunxu @.>; @.> 主题: Re: [xuechunxu/DiTing] Diting on MAGs (Issue #25)

Thanks xuechun,

Right, I used METABOLIC-G, but it just missed some annotations from the methane production pathway. It would be good if diting can be separated into modules with each step can be executed in each module.

Cheers, all the best!

― Reply to this email directly, view it on GitHubhttps://github.com/xuechunxu/DiTing/issues/25#issuecomment-1347577753, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AFUHDPHGMFHCPJ6GW3CKM4TWM7AFXANCNFSM6AAAAAAS4SH7DQ. You are receiving this because you commented.Message ID: @.***>

[KennLu2914]

Cool, I will give it a try.

Thanks