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Published 20 hours ago • verified publisher icon xl-sr

'conda env create -f environment.yml' - not working

Open Kojo7 opened this issue 4 years ago • 0 comments

Can anyone help me with these issues, please..??

`Collecting package metadata (repodata.json): done Solving environment: done Preparing transaction: done Verifying transaction: done Executing transaction: done Ran pip subprocess with arguments: ['/home/praful/anaconda3/envs/CAL/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt'] Pip subprocess output: Collecting attrs==19.1.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/23/96/d828354fa2dbdf216eaa7b7de0db692f12c234f7ef888cc14980ef40d1d2/attrs-19.1.0-py2.py3-none-any.whl Collecting backcall==0.1.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 2)) Requirement already up-to-date: numpy==1.16.4 in /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 3)) (1.16.4) Collecting bleach==3.1.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 4)) Using cached https://files.pythonhosted.org/packages/ab/05/27e1466475e816d3001efb6e0a85a819be17411420494a1e602c36f8299d/bleach-3.1.0-py2.py3-none-any.whl Collecting cycler==0.10.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 5)) Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl Collecting decorator==4.4.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 6)) Using cached https://files.pythonhosted.org/packages/5f/88/0075e461560a1e750a0dcbf77f1d9de775028c37a19a346a6c565a257399/decorator-4.4.0-py2.py3-none-any.whl Collecting defusedxml==0.6.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 7)) Using cached https://files.pythonhosted.org/packages/06/74/9b387472866358ebc08732de3da6dc48e44b0aacd2ddaa5cb85ab7e986a2/defusedxml-0.6.0-py2.py3-none-any.whl Collecting entrypoints==0.3 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 8)) Using cached https://files.pythonhosted.org/packages/ac/c6/44694103f8c221443ee6b0041f69e2740d89a25641e62fb4f2ee568f2f9c/entrypoints-0.3-py2.py3-none-any.whl Collecting imageio==2.5.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 9)) Using cached https://files.pythonhosted.org/packages/af/0a/943c965d372dae0b1f1482677d29030ab834351a61a9a632fd62f27f1523/imageio-2.5.0-py3-none-any.whl Collecting imgaug==0.2.9 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 10)) Using cached https://files.pythonhosted.org/packages/17/a9/36de8c0e1ffb2d86f871cac60e5caa910cbbdb5f4741df5ef856c47f4445/imgaug-0.2.9-py2.py3-none-any.whl Collecting ipdb==0.12 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 11)) Collecting ipykernel==5.1.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 12)) Using cached https://files.pythonhosted.org/packages/a0/35/dd97fbb48d4e6b5ae97307497e31e46691adc2feedb6279d29fc1c8ad9c1/ipykernel-5.1.1-py3-none-any.whl Collecting ipython==7.5.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 13)) Using cached https://files.pythonhosted.org/packages/a9/2e/41dce4ed129057e05a555a7f9629aa2d5f81fdcd4d16568bc24b75a1d2c9/ipython-7.5.0-py3-none-any.whl Collecting ipython-genutils==0.2.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 14)) Using cached https://files.pythonhosted.org/packages/fa/bc/9bd3b5c2b4774d5f33b2d544f1460be9df7df2fe42f352135381c347c69a/ipython_genutils-0.2.0-py2.py3-none-any.whl Collecting ipywidgets==7.4.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 15)) Using cached https://files.pythonhosted.org/packages/30/9a/a008c7b1183fac9e52066d80a379b3c64eab535bd9d86cdc29a0b766fd82/ipywidgets-7.4.2-py2.py3-none-any.whl Collecting jedi==0.13.3 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 16)) Using cached https://files.pythonhosted.org/packages/25/2b/1f188901be099d52d7b06f4d3b7cb9f8f09692c50697b139eaf6fa2928d8/jedi-0.13.3-py2.py3-none-any.whl Collecting jinja2==2.10.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 17)) Using cached https://files.pythonhosted.org/packages/1d/e7/fd8b501e7a6dfe492a433deb7b9d833d39ca74916fa8bc63dd1a4947a671/Jinja2-2.10.1-py2.py3-none-any.whl Collecting joblib==0.13.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 18)) Using cached https://files.pythonhosted.org/packages/cd/c1/50a758e8247561e58cb87305b1e90b171b8c767b15b12a1734001f41d356/joblib-0.13.2-py2.py3-none-any.whl Collecting jsonschema==3.0.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 19)) Using cached https://files.pythonhosted.org/packages/aa/69/df679dfbdd051568b53c38ec8152a3ab6bc533434fc7ed11ab034bf5e82f/jsonschema-3.0.1-py2.py3-none-any.whl Collecting jupyter==1.0.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 20)) Using cached https://files.pythonhosted.org/packages/83/df/0f5dd132200728a86190397e1ea87cd76244e42d39ec5e88efd25b2abd7e/jupyter-1.0.0-py2.py3-none-any.whl Collecting jupyter-client==5.2.4 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 21)) Using cached https://files.pythonhosted.org/packages/3b/c3/3043fe9ffd140d03c9d091a056794ccdc427c56ec19b8eea74f9ea0a498f/jupyter_client-5.2.4-py2.py3-none-any.whl Collecting jupyter-console==6.0.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 22)) Using cached https://files.pythonhosted.org/packages/cb/ee/6374ae8c21b7d0847f9c3722dcdfac986b8e54fa9ad9ea66e1eb6320d2b8/jupyter_console-6.0.0-py2.py3-none-any.whl Collecting jupyter-core==4.4.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 23)) Using cached https://files.pythonhosted.org/packages/1d/44/065d2d7bae7bebc06f1dd70d23c36da8c50c0f08b4236716743d706762a8/jupyter_core-4.4.0-py2.py3-none-any.whl Collecting kiwisolver==1.1.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 24)) Using cached https://files.pythonhosted.org/packages/f8/a1/5742b56282449b1c0968197f63eae486eca2c35dcd334bab75ad524e0de1/kiwisolver-1.1.0-cp36-cp36m-manylinux1_x86_64.whl Collecting markupsafe==1.1.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 25)) Using cached https://files.pythonhosted.org/packages/b2/5f/23e0023be6bb885d00ffbefad2942bc51a620328ee910f64abe5a8d18dd1/MarkupSafe-1.1.1-cp36-cp36m-manylinux1_x86_64.whl Collecting matplotlib==3.1.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 26)) Using cached https://files.pythonhosted.org/packages/da/83/d989ee20c78117c737ab40e0318ea221f1aed4e3f5a40b4f93541b369b93/matplotlib-3.1.0-cp36-cp36m-manylinux1_x86_64.whl Collecting mistune==0.8.4 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 27)) Using cached https://files.pythonhosted.org/packages/09/ec/4b43dae793655b7d8a25f76119624350b4d65eb663459eb9603d7f1f0345/mistune-0.8.4-py2.py3-none-any.whl Collecting nbconvert==5.5.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 28)) Using cached https://files.pythonhosted.org/packages/35/e7/f46c9d65f149271e47fca6ab084ef5c6e4cb1870f4c5cce6690feac55231/nbconvert-5.5.0-py2.py3-none-any.whl Collecting nbformat==4.4.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 29)) Using cached https://files.pythonhosted.org/packages/da/27/9a654d2b6cc1eaa517d1c5a4405166c7f6d72f04f6e7eea41855fe808a46/nbformat-4.4.0-py2.py3-none-any.whl Collecting networkx==2.3 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 30)) Collecting notebook==5.7.8 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 31)) Using cached https://files.pythonhosted.org/packages/f6/36/89ebfffc9dd8c8dbd81c1ffb53e3d4233ee666414c143959477cb07cc5f5/notebook-5.7.8-py2.py3-none-any.whl Collecting bcolz==1.2.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 32)) Using cached https://files.pythonhosted.org/packages/5c/4e/23942de9d5c0fb16f10335fa83e52b431bcb8c0d4a8419c9ac206268c279/bcolz-1.2.1.tar.gz Collecting opencv-python==4.1.0.25 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 33)) Using cached https://files.pythonhosted.org/packages/7b/d2/a2dbf83d4553ca6b3701d91d75e42fe50aea97acdc00652dca515749fb5d/opencv_python-4.1.0.25-cp36-cp36m-manylinux1_x86_64.whl Collecting pandas==0.24.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 34)) Using cached https://files.pythonhosted.org/packages/19/74/e50234bc82c553fecdbd566d8650801e3fe2d6d8c8d940638e3d8a7c5522/pandas-0.24.2-cp36-cp36m-manylinux1_x86_64.whl Collecting pandocfilters==1.4.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 35)) Collecting parso==0.4.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 36)) Using cached https://files.pythonhosted.org/packages/a7/bd/e2f4753c5fa93932899243b4299011a757ac212e9bc8ddf062f38df4e78b/parso-0.4.0-py2.py3-none-any.whl Collecting pexpect==4.7.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 37)) Using cached https://files.pythonhosted.org/packages/0e/3e/377007e3f36ec42f1b84ec322ee12141a9e10d808312e5738f52f80a232c/pexpect-4.7.0-py2.py3-none-any.whl Collecting pickleshare==0.7.5 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 38)) Using cached https://files.pythonhosted.org/packages/9a/41/220f49aaea88bc6fa6cba8d05ecf24676326156c23b991e80b3f2fc24c77/pickleshare-0.7.5-py2.py3-none-any.whl Collecting pillow==6.0.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 39)) Using cached https://files.pythonhosted.org/packages/d2/c2/f84b1e57416755e967236468dcfb0fad7fd911f707185efc4ba8834a1a94/Pillow-6.0.0-cp36-cp36m-manylinux1_x86_64.whl Collecting prometheus-client==0.6.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 40)) Collecting prompt-toolkit==2.0.9 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 41)) Using cached https://files.pythonhosted.org/packages/f7/a7/9b1dd14ef45345f186ef69d175bdd2491c40ab1dfa4b2b3e4352df719ed7/prompt_toolkit-2.0.9-py3-none-any.whl Collecting protobuf==3.8.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 42)) Using cached https://files.pythonhosted.org/packages/d2/fb/29de8d08967f0cce1bb10b39846d836b0f3bf6776ddc36aed7c73498ca7e/protobuf-3.8.0-cp36-cp36m-manylinux1_x86_64.whl Collecting ptyprocess==0.6.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 43)) Using cached https://files.pythonhosted.org/packages/d1/29/605c2cc68a9992d18dada28206eeada56ea4bd07a239669da41674648b6f/ptyprocess-0.6.0-py2.py3-none-any.whl Collecting pygame==1.9.6 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 44)) Using cached https://files.pythonhosted.org/packages/8e/24/ede6428359f913ed9cd1643dd5533aefeb5a2699cc95bea089de50ead586/pygame-1.9.6-cp36-cp36m-manylinux1_x86_64.whl Collecting pygments==2.4.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 45)) Using cached https://files.pythonhosted.org/packages/5c/73/1dfa428150e3ccb0fa3e68db406e5be48698f2a979ccbcec795f28f44048/Pygments-2.4.2-py2.py3-none-any.whl Collecting pyparsing==2.4.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 46)) Using cached https://files.pythonhosted.org/packages/dd/d9/3ec19e966301a6e25769976999bd7bbe552016f0d32b577dc9d63d2e0c49/pyparsing-2.4.0-py2.py3-none-any.whl Collecting pyrsistent==0.15.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 47)) Collecting python-dateutil==2.8.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 48)) Using cached https://files.pythonhosted.org/packages/41/17/c62faccbfbd163c7f57f3844689e3a78bae1f403648a6afb1d0866d87fbb/python_dateutil-2.8.0-py2.py3-none-any.whl Collecting pytz==2019.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 49)) Using cached https://files.pythonhosted.org/packages/3d/73/fe30c2daaaa0713420d0382b16fbb761409f532c56bdcc514bf7b6262bb6/pytz-2019.1-py2.py3-none-any.whl Collecting pywavelets==1.0.3 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 50)) Using cached https://files.pythonhosted.org/packages/4e/cd/528dba0b474b08f6f9a3a5e1b4bb23d8e33ed5d9f0e321cc967c2607df05/PyWavelets-1.0.3-cp36-cp36m-manylinux1_x86_64.whl Collecting pyzmq==18.0.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 51)) Using cached https://files.pythonhosted.org/packages/5f/04/f6f0fa20b698b29c6e6b1d6b4b575c12607b0abf61810aab1df4099988c6/pyzmq-18.0.1-cp36-cp36m-manylinux1_x86_64.whl Collecting qtconsole==4.5.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 52)) Using cached https://files.pythonhosted.org/packages/79/0b/efb5a694b6922bb85c35e4f1db6197daae23c764dd384023fc9517d79e26/qtconsole-4.5.1-py2.py3-none-any.whl Collecting scikit-image==0.15.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 53)) Using cached https://files.pythonhosted.org/packages/d4/ab/674e168bf7d0bc597218b3bec858d02c23fbac9ec1fec9cad878c6cee95f/scikit_image-0.15.0-cp36-cp36m-manylinux1_x86_64.whl Collecting scikit-learn==0.21.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 54)) Using cached https://files.pythonhosted.org/packages/85/04/49633f490f726da6e454fddc8e938bbb5bfed2001681118d3814c219b723/scikit_learn-0.21.2-cp36-cp36m-manylinux1_x86_64.whl Collecting scipy==1.1.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 55)) Using cached https://files.pythonhosted.org/packages/a8/0b/f163da98d3a01b3e0ef1cab8dd2123c34aee2bafbb1c5bffa354cc8a1730/scipy-1.1.0-cp36-cp36m-manylinux1_x86_64.whl Collecting send2trash==1.5.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 56)) Using cached https://files.pythonhosted.org/packages/49/46/c3dc27481d1cc57b9385aff41c474ceb7714f7935b1247194adae45db714/Send2Trash-1.5.0-py3-none-any.whl Collecting shapely==1.6.4.post2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 57)) Using cached https://files.pythonhosted.org/packages/38/b6/b53f19062afd49bb5abd049aeed36f13bf8d57ef8f3fa07a5203531a0252/Shapely-1.6.4.post2-cp36-cp36m-manylinux1_x86_64.whl Collecting six==1.12.0 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 58)) Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl Collecting terminado==0.8.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 59)) Using cached https://files.pythonhosted.org/packages/a7/56/80ea7fa66565fa75ae21ce0c16bc90067530e5d15e48854afcc86585a391/terminado-0.8.2-py2.py3-none-any.whl Collecting testpath==0.4.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 60)) Using cached https://files.pythonhosted.org/packages/be/a4/162f9ebb6489421fe46dcca2ae420369edfee4b563c668d93cb4605d12ba/testpath-0.4.2-py2.py3-none-any.whl Requirement already up-to-date: torch==1.1.0 in /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 61)) (1.1.0) Collecting torchvision==0.2.2.post3 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 62)) Using cached https://files.pythonhosted.org/packages/fb/01/03fd7e503c16b3dc262483e5555ad40974ab5da8b9879e164b56c1f4ef6f/torchvision-0.2.2.post3-py2.py3-none-any.whl Collecting tornado==6.0.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 63)) Collecting tqdm==4.32.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 64)) Using cached https://files.pythonhosted.org/packages/45/af/685bf3ce889ea191f3b916557f5677cc95a5e87b2fa120d74b5dd6d049d0/tqdm-4.32.1-py2.py3-none-any.whl Collecting traitlets==4.3.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 65)) Using cached https://files.pythonhosted.org/packages/93/d6/abcb22de61d78e2fc3959c964628a5771e47e7cc60d53e9342e21ed6cc9a/traitlets-4.3.2-py2.py3-none-any.whl Collecting wcwidth==0.1.7 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 66)) Using cached https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl Collecting webencodings==0.5.1 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 67)) Using cached https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl Collecting widgetsnbextension==3.4.2 (from -r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 68)) Using cached https://files.pythonhosted.org/packages/8a/81/35789a3952afb48238289171728072d26d6e76649ddc8b3588657a2d78c1/widgetsnbextension-3.4.2-py2.py3-none-any.whl Requirement already satisfied, skipping upgrade: setuptools in /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages (from ipdb==0.12->-r /home/praful/Desktop/CAL/condaenv.m2m374s9.requirements.txt (line 11)) (41.0.1) Building wheels for collected packages: bcolz Building wheel for bcolz (setup.py): started Building wheel for bcolz (setup.py): finished with status 'error' Running setup.py clean for bcolz Failed to build bcolz Installing collected packages: attrs, backcall, webencodings, six, bleach, cycler, decorator, defusedxml, entrypoints, pillow, imageio, scipy, pywavelets, networkx, kiwisolver, pyparsing, python-dateutil, matplotlib, scikit-image, shapely, opencv-python, imgaug, ptyprocess, pexpect, ipython-genutils, traitlets, pygments, parso, jedi, wcwidth, prompt-toolkit, pickleshare, ipython, ipdb, pyzmq, jupyter-core, tornado, jupyter-client, ipykernel, terminado, prometheus-client, markupsafe, jinja2, pyrsistent, jsonschema, nbformat, testpath, pandocfilters, mistune, nbconvert, send2trash, notebook, widgetsnbextension, ipywidgets, joblib, qtconsole, jupyter-console, jupyter, bcolz, pytz, pandas, protobuf, pygame, scikit-learn, torchvision, tqdm Running setup.py install for bcolz: started Running setup.py install for bcolz: finished with status 'error'

Pip subprocess error: ERROR: Complete output from command /home/praful/anaconda3/envs/CAL/bin/python -u -c 'import setuptools, tokenize;file='"'"'/tmp/pip-install-sk01kd62/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-56t_5sgi --python-tag cp36: ERROR: SSE2 detected AVX2 detected running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/bcolz copying bcolz/version.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/init.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/defaults.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/attrs.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/toplevel.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/utils.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/py2help.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/arrayprint.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/ctable.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/chunked_eval.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/py2help_tests.py -> build/lib.linux-x86_64-3.6/bcolz creating build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ndcarray.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/init.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/all.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray_objects.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ctable.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_queries.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/common.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_attrs.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/carray_ext.pxd -> build/lib.linux-x86_64-3.6/bcolz running build_ext skipping 'bcolz/carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/bcolz creating build/temp.linux-x86_64-3.6/c-blosc creating build/temp.linux-x86_64-3.6/c-blosc/blosc creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress gcc -pthread -B /home/praful/anaconda3/envs/CAL/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -I/home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include -I/home/praful/anaconda3/envs/CAL/include/python3.6m -c bcolz/carray_ext.c -o build/temp.linux-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824, from /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from bcolz/carray_ext.c:525: /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with "
| ^~~~~~~ gcc -pthread -B /home/praful/anaconda3/envs/CAL/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -I/home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include -I/home/praful/anaconda3/envs/CAL/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/shuffle.c:170:1: error: conflicting types for ‘_xgetbv’ 170 | _xgetbv(uint32_t xcr) { | ^~~~~~~ In file included from /usr/lib/gcc/x86_64-linux-gnu/9/include/immintrin.h:43, from c-blosc/blosc/blosc-common.h:77, from c-blosc/blosc/shuffle.h:18, from c-blosc/blosc/shuffle.c:10: /usr/lib/gcc/x86_64-linux-gnu/9/include/xsaveintrin.h:60:1: note: previous definition of ‘_xgetbv’ was here 60 | _xgetbv (unsigned int __A) | ^~~~~~~ In file included from c-blosc/blosc/shuffle.c:11: c-blosc/blosc/shuffle-generic.h:61:13: warning: ‘unshuffle_generic_inline’ defined but not used [-Wunused-function] 61 | static void unshuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-blosc/blosc/shuffle-generic.h:32:13: warning: ‘shuffle_generic_inline’ defined but not used [-Wunused-function] 32 | static void shuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~ error: command 'gcc' failed with exit status 1

ERROR: Failed building wheel for bcolz ERROR: Complete output from command /home/praful/anaconda3/envs/CAL/bin/python -u -c 'import setuptools, tokenize;file='"'"'/tmp/pip-install-sk01kd62/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-c5mjmafv/install-record.txt --single-version-externally-managed --compile: ERROR: SSE2 detected AVX2 detected running install running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/bcolz copying bcolz/version.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/init.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/defaults.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/attrs.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/toplevel.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/utils.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/py2help.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/arrayprint.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/ctable.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/chunked_eval.py -> build/lib.linux-x86_64-3.6/bcolz copying bcolz/py2help_tests.py -> build/lib.linux-x86_64-3.6/bcolz creating build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ndcarray.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/init.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/all.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray_objects.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ctable.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_queries.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/common.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/tests/test_attrs.py -> build/lib.linux-x86_64-3.6/bcolz/tests copying bcolz/carray_ext.pxd -> build/lib.linux-x86_64-3.6/bcolz running build_ext skipping 'bcolz/carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/bcolz creating build/temp.linux-x86_64-3.6/c-blosc creating build/temp.linux-x86_64-3.6/c-blosc/blosc creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4 creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy creating build/temp.linux-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress gcc -pthread -B /home/praful/anaconda3/envs/CAL/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -I/home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include -I/home/praful/anaconda3/envs/CAL/include/python3.6m -c bcolz/carray_ext.c -o build/temp.linux-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1824, from /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from bcolz/carray_ext.c:525: /home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with "
| ^~~~~~~ gcc -pthread -B /home/praful/anaconda3/envs/CAL/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/compress -I/home/praful/anaconda3/envs/CAL/lib/python3.6/site-packages/numpy/core/include -I/home/praful/anaconda3/envs/CAL/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.linux-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/shuffle.c:170:1: error: conflicting types for ‘_xgetbv’ 170 | _xgetbv(uint32_t xcr) { | ^~~~~~~ In file included from /usr/lib/gcc/x86_64-linux-gnu/9/include/immintrin.h:43, from c-blosc/blosc/blosc-common.h:77, from c-blosc/blosc/shuffle.h:18, from c-blosc/blosc/shuffle.c:10: /usr/lib/gcc/x86_64-linux-gnu/9/include/xsaveintrin.h:60:1: note: previous definition of ‘_xgetbv’ was here 60 | _xgetbv (unsigned int __A) | ^~~~~~~ In file included from c-blosc/blosc/shuffle.c:11: c-blosc/blosc/shuffle-generic.h:61:13: warning: ‘unshuffle_generic_inline’ defined but not used [-Wunused-function] 61 | static void unshuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~~~ c-blosc/blosc/shuffle-generic.h:32:13: warning: ‘shuffle_generic_inline’ defined but not used [-Wunused-function] 32 | static void shuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~ error: command 'gcc' failed with exit status 1 ---------------------------------------- ERROR: Command "/home/praful/anaconda3/envs/CAL/bin/python -u -c 'import setuptools, tokenize;file='"'"'/tmp/pip-install-sk01kd62/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-c5mjmafv/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-sk01kd62/bcolz/

CondaEnvException: Pip failed `

Thanks.

Kojo7 avatar Sep 17 '20 10:09 Kojo7