msisensor-pro
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issues on toy dataset
Hi, When running MSIsensor-pro on a very small data for unit testing, the tool crashes saying ;
loading bed regions ...
loading homopolymer and microsatellite sites ...
Total loading windows: 1
Total loading homopolymer and microsatellites: 0
Program aborted:
Same reference genome file should be used in both scan and msi/pro/baseline steps!!!
I'm almost sure the error is not linked to the reference genome, as scan
and msi
has been run with the same input file.
My feeling is that this error is raised because the toy dataset is too small, and that no homopolymer/microsatellites are detected. Would it make sense ?
Thanks